Mass Spectrometry Protocols and Methods | Springer Nature Experiments
DDIA: data dependent-independent acquisition proteomics - DDA and DIA in a single LC-MS/MS run | bioRxiv
Hybrid Spectral Library Combining DIA-MS Data and a Targeted Virtual Library Substantially Deepens the Proteome Coverage - ScienceDirect
Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry | Nature Communications
Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a tutorial | Molecular Systems Biology
SWATH mass spectrometry as a tool for quantitative profiling of the matrisome - ScienceDirect
Sensitive Immunopeptidomics by Leveraging Available Large-Scale Multi-HLA Spectral Libraries, Data-Independent Acquisition, and MS/MS Prediction - Molecular & Cellular Proteomics
Data-independent acquisition mass spectrometry (DIA-MS) for proteomic applications in oncology - Molecular Omics (RSC Publishing) DOI:10.1039/D0MO00072H
SWATH mass spectrometry analysis - that is it? | Alphalyse
SWATH-MS-Based Proteomics: Strategies and Applications in Plants: Trends in Biotechnology
Mass-spectrometric exploration of proteome structure and function | Nature
Data-independent acquisition mass spectrometry (DIA-MS) for proteomic applications in oncology - Molecular Omics (RSC Publishing) DOI:10.1039/D0MO00072H
Data‐Independent Acquisition Mass Spectrometry‐Based Proteomics and Software Tools: A Glimpse in 2020 - Zhang - 2020 - PROTEOMICS - Wiley Online Library
Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry
Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning | Request PDF
Frontiers | Proteomics Approaches for Biomarker and Drug Target Discovery in ALS and FTD | Neuroscience
Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a tutorial | Molecular Systems Biology
Data-independent acquisition method for ubiquitinome analysis reveals regulation of circadian biology | Nature Communications
DIA mass spectrometry
DIA mass spectrometry | Nature Methods
Frontiers | Recent Developments in Data Independent Acquisition (DIA) Mass Spectrometry: Application of Quantitative Analysis of the Brain Proteome | Molecular Neuroscience
Group-DIA: analyzing multiple data-independent acquisition mass spectrometry data files | Nature Methods
Proteomes | Free Full-Text | A Critical Review of Bottom-Up Proteomics: The Good, the Bad, and the Future of This Field | HTML
New Nature Communications publication by Mann & Theis Groups harnesses the benefits of large-scale peptide collisional cross section (CCS) measurements and deep learning for 4D-proteomics
PDF) Identification of small molecules using accurate mass MS/MS search
IJMS | Free Full-Text | Bioinformatics Methods for Mass Spectrometry-Based Proteomics Data Analysis | HTML
